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HIV-1 capsid C-terminal domain mutant (Y169A) in complex with an inhibitor of particle assembly (cai)
Analyse HIV-1 capsid C-terminal domain mutant (Y169A) in complex with an inhibitor of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3DS3
- Type
- protein
- Length
- 170 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- HIV-1 capsid protein; Peptide inhibitor of capsid assembly
- UniProt
- Q72497
Structure
x-ray diffraction · 2 distinct chains · 65% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | HIV-1 capsid protein | protein | 73 | 64% helix, 0% strand | Q72497 |
| C, D | Peptide inhibitor of capsid assembly | protein | 12 | 67% helix, 0% strand | — |
Interfaces
3 interfaces between chains.
- B–D · 674 Ų buried · 5 hydrogen bonds · protein-protein
- A–C · 625 Ų buried · 4 hydrogen bonds · protein-protein
- A–B · 491 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 3DS3 · HIV-1 capsid C-terminal domain mutant (Y169A) in complex with an inhibitor of particle… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q72497
- Elsewhere: RCSB PDB 3DS3 · PDBe 3DS3 · UniProt Q72497
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