Research workbench
Crystal structure of the oxidoreductase ylbe from lactococcus lactis, northeast structural genomics consortium target KR121.
Analyse Crystal structure of the oxidoreductase ylbe from lactococcus lactis, northeast… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3DQP
- Type
- protein
- Length
- 219 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Oxidoreductase ylbe
- UniProt
- Q9CGI7
- Pockets
- 1 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Oxidoreductase ylbe | protein | 219 | 37% helix, 22% strand | Q9CGI7 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 281 | 0.56 | 0.77 | 43 | empty |
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 3DQP · Crystal structure of the oxidoreductase ylbE from Lactococcus lactis, Northeast… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9CGI7
- Elsewhere: RCSB PDB 3DQP · PDBe 3DQP · UniProt Q9CGI7
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