Research workbench
Crystal structure of methyltransferase involved in cell division from thermoplasma volcanicum GSS1
Analyse Crystal structure of methyltransferase involved in cell division from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3DOU
- Type
- protein
- Length
- 175 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribosomal RNA large subunit methyltransferase J
- EC
- 2.1.1.-
- UniProt
- Q97C13
- Ligands
- SAM
- Pockets
- 1 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosomal RNA large subunit methyltransferase J (EC 2.1.1.-) | protein | 175 | 37% helix, 28% strand | Q97C13 |
Ligands and binding sites
- SAM · S-adenosylmethionine · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 140 | 0.51 | 0.80 | 28 | SAM |
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 3DOU · Crystal structure of methyltransferase involved in cell division from thermoplasma… · the same entry in another collection · chain A against A, TM-score 1.00
- Q97C13 · AlphaFold monomer V2.0 prediction for ribosomal RNA large subunit methyltransferase E… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q97C13
- Elsewhere: RCSB PDB 3DOU · PDBe 3DOU · UniProt Q97C13
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