Research workbench
Crystal structure of protein BA1542 from bacillus anthracis STR.AMES
Analyse Crystal structure of protein BA1542 from bacillus anthracis STR.AMES in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3DO9
- Type
- protein
- Length
- 520 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- UPF0302 protein BA_1542/GBAA1542/BAS1430
- UniProt
- Q81SV3
- Pockets
- 8 · best druggability 0.57
Structure
x-ray diffraction · 3 distinct chains · 50% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | UPF0302 protein BA_1542/GBAA1542/BAS1430 | protein | 179 | 51% helix, 14% strand | Q81SV3 |
| B | UPF0302 protein BA_1542/GBAA1542/BAS1430 | protein | 177 | 50% helix, 13% strand | Q81SV3 |
| C | UPF0302 protein BA_1542/GBAA1542/BAS1430 | protein | 164 | 51% helix, 14% strand | Q81SV3 |
Pockets
8 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 505 | 0.57 | 0.73 | 62 | empty |
| 2 | 86 | 0.48 | 0.82 | 16 | empty |
| 3 | 145 | 0.47 | 0.77 | 15 | empty |
| 4 | 66 | 0.38 | 0.79 | 15 | empty |
| 5 | 88 | 0.36 | 0.76 | 16 | empty |
Interfaces
2 interfaces between chains.
- A–B · 1038 Ų buried · 10 hydrogen bonds · protein-protein
- A–C · 193 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 3DO9 · Crystal structure of protein ba1542 from bacillus anthracis str.ames · the same entry in another collection · chain A against A, TM-score 1.00
- Q81SV3 · AlphaFold monomer V2.0 prediction for UPF0302 protein BA_1542/GBAA_1542/BAS1430 (Q81SV3) · a predicted model of the same protein · chain C against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q81SV3
- Elsewhere: RCSB PDB 3DO9 · PDBe 3DO9 · UniProt Q81SV3
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