Research workbench
Crystal structure of stress response protein yhax from bacillus subtilis
Analyse Crystal structure of stress response protein yhax from bacillus subtilis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3DNP
- Type
- protein
- Length
- 275 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Stress response protein yhax
- UniProt
- O07539
- Ligands
- MG
- Pockets
- 2 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Stress response protein yhax | protein | 275 | 41% helix, 21% strand | O07539 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 405 | 0.72 | 0.83 | 46 | EDO |
| 2 | 64 | 0.29 | 0.73 | 15 | empty |
Modifications
Observed in the structure: 7 modified (engineered).
Compared structures
- 3DNP · Crystal structure of Stress response protein yhaX from Bacillus subtilis · the same entry in another collection · chain A against A, TM-score 1.00
- O07539 · AlphaFold monomer V2.0 prediction for stress response protein yhax (O07539) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O07539
- Elsewhere: RCSB PDB 3DNP · PDBe 3DNP · UniProt O07539
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