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The crystal structure of the protein ATU2129 (unknown function) from agrobacterium tumefaciens str. C58

Analyse The crystal structure of the protein ATU2129 (unknown function) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3DNH
Type: protein
Length: 467 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein ATU2129
UniProt: A9CI98
Pockets: 7 · best druggability 0.54

Structure

x-ray diffraction · 2 distinct chains · 34% helix, 29% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein ATU2129	protein	234	35% helix, 29% strand	A9CI98
B	Uncharacterized protein ATU2129	protein	233	34% helix, 29% strand	A9CI98

Pockets

7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	110	0.54	0.83	23	empty
2	148	0.47	0.77	33	empty
3	179	0.47	0.76	28	empty
4	67	0.34	0.76	16	empty
5	53	0.33	0.77	13	empty

Interfaces

1 interface between chains.

A–B · 2312 Å² buried · 48 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

3DNH · The crystal structure of the protein Atu2129 (unknown function) from Agrobacterium… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A9CI98
Elsewhere: RCSB PDB 3DNH · PDBe 3DNH · UniProt A9CI98

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