Research workbench
Crystal structure of putative isomerase from rhodopseudomonas palustris
Analyse Crystal structure of putative isomerase from rhodopseudomonas palustris in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3DM8
- Type
- protein
- Length
- 135 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein RPA4348
- UniProt
- Q6N1Q6
- Ligands
- CE9
- Pockets
- 1 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein RPA4348 | protein | 135 | 33% helix, 45% strand | Q6N1Q6 |
Ligands and binding sites
- CE9 · Dodecyl nona ethylene glycol ether · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 230 | 0.78 | 0.90 | 39 | empty |
Compared structures
- 3DM8 · Crystal Structure of Putative Isomerase from Rhodopseudomonas palustris · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6N1Q6
- Elsewhere: RCSB PDB 3DM8 · PDBe 3DM8 · UniProt Q6N1Q6
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