Research workbench
Crystal structure of thermotoga maritima encapsulin
Analyse Crystal structure of thermotoga maritima encapsulin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3DKT
- Type
- protein
- Length
- 2,720 residues
- Chains
- 20
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Maritimacin; Putative uncharacterized protein
- EC
- 3.4.-.-
- UniProt
- Q9WZP2, Q9WZP3
- Pockets
- 20 · best druggability 0.65
Structure
x-ray diffraction · 2 distinct chains · 34% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J | Maritimacin (EC 3.4.-.-) | protein | 264 | 35% helix, 29% strand | Q9WZP2 |
| K, L, M, N, O, P, Q, R, S, T | Putative uncharacterized protein | protein | 8 | 0% helix, 0% strand | Q9WZP3 |
Pockets
20 pockets found on a 1 Å grid, 12 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 270 | 0.65 | 0.82 | 26 | empty |
| 2 | 245 | 0.65 | 0.82 | 25 | empty |
| 3 | 268 | 0.65 | 0.82 | 29 | empty |
| 4 | 253 | 0.64 | 0.82 | 26 | empty |
| 5 | 272 | 0.64 | 0.81 | 27 | empty |
Interfaces
23 interfaces between chains.
- D–I · 1333 Ų buried · 18 hydrogen bonds · protein-protein
- D–E · 1304 Ų buried · 16 hydrogen bonds · protein-protein
- I–J · 1289 Ų buried · 15 hydrogen bonds · protein-protein
- F–G · 1287 Ų buried · 16 hydrogen bonds · protein-protein
- B–C · 1282 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 3DKT · Crystal structure of Thermotoga maritima encapsulin · the same entry in another collection · chain K against K, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WZP2
- Every structure of UniProt Q9WZP3
- Elsewhere: RCSB PDB 3DKT · PDBe 3DKT · UniProt Q9WZP2 · UniProt Q9WZP3
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