Research workbench
Crystallization of the thermotoga maritima lysine riboswitch in free form
Analyse Crystallization of the thermotoga maritima lysine riboswitch in free form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3DIS
- Type
- RNA
- Length
- 174 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (174-mer)
- Ligands
- NA
- Pockets
- 6 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA (174-mer) | rna | 174 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 601 | 0.69 | 0.79 | 50 | NA |
| 2 | 442 | 0.67 | 0.80 | 30 | empty |
| 3 | 261 | 0.47 | 0.74 | 18 | empty |
| 4 | 274 | 0.46 | 0.73 | 24 | NA |
| 5 | 117 | 0.38 | 0.75 | 17 | NA |
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 3DIS · Crystallization of the Thermotoga maritima lysine riboswitch in free form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3DIS · PDBe 3DIS
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