Research workbench
Mapping metal-binding sites in the catalytic domain of bacterial RNase P RNA
Analyse Mapping metal-binding sites in the catalytic domain of bacterial RNase P RNA in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3DHS
- Type
- RNA
- Length
- 215 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNase P RNA
- EC
- 3.1.26.5
- Ligands
- OS
- Pockets
- 10 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNase P RNA (EC 3.1.26.5) | rna | 215 | — | — |
Ligands and binding sites
- OS · Osmium ion · metal · 15 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
10 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 718 | 0.69 | 0.77 | 47 | OS |
| 2 | 512 | 0.64 | 0.77 | 31 | OS |
| 3 | 660 | 0.62 | 0.74 | 29 | empty |
| 4 | 678 | 0.61 | 0.74 | 37 | OS |
| 5 | 319 | 0.50 | 0.73 | 18 | OS |
Compared structures
- 3DHS · Mapping metal-binding sites in the catalytic domain of bacterial RNase P RNA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3DHS · PDBe 3DHS
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