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Structure of pseudomonas quinolone signal response protein pqse

Analyse Structure of pseudomonas quinolone signal response protein pqse in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3DH8
Type: protein
Length: 299 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein PA1000
UniProt: P20581
Ligands: B4N, FE
Pockets: 1 · best druggability 0.70

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein PA1000	protein	299	39% helix, 24% strand	P20581

Ligands and binding sites

B4N · bis(4-nitrophenyl) hydrogen phosphate · ligand · chains A
FE · Fe (III) ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	211	0.70	0.86	37	B4N

Compared structures

3DH8 · Structure of Pseudomonas Quinolone Signal Response Protein PqsE · the same entry in another collection · chain A against A, TM-score 1.00
P20581 · AlphaFold monomer V2.0 prediction for 2-aminobenzoylacetyl-CoA thioesterase (P20581) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P20581
Elsewhere: RCSB PDB 3DH8 · PDBe 3DH8 · UniProt P20581

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