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Crystal structure of mandelate RACEMASE/MUCONATE lactonizing enzyme from bordetella bronchiseptica RB50
Analyse Crystal structure of mandelate RACEMASE/MUCONATE lactonizing enzyme from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3DDM
- Type
- protein
- Length
- 1,452 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative mandelate RACEMASE/MUCONATE lactonizing enzyme
- UniProt
- Q7WJN4
- Pockets
- 19 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Putative mandelate RACEMASE/MUCONATE lactonizing enzyme | protein | 363 | 45% helix, 19% strand | Q7WJN4 |
Pockets
19 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 685 | 0.72 | 0.79 | 65 | empty |
| 2 | 391 | 0.64 | 0.78 | 54 | empty |
| 3 | 331 | 0.59 | 0.77 | 45 | empty |
| 4 | 338 | 0.57 | 0.76 | 37 | empty |
| 5 | 199 | 0.53 | 0.78 | 23 | empty |
Interfaces
4 interfaces between chains.
- B–C · 1192 Ų buried · 15 hydrogen bonds · protein-protein
- C–D · 516 Ų buried · 4 hydrogen bonds · protein-protein
- A–B · 337 Ų buried · 7 hydrogen bonds · protein-protein
- B–D · 233 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 3DDM · CRYSTAL STRUCTURE OF MANDELATE RACEMASE/MUCONATE LACTONIZING ENZYME FROM Bordetella… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7WJN4
- Elsewhere: RCSB PDB 3DDM · PDBe 3DDM · UniProt Q7WJN4
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