Research workbench
Crystal structure of a cbs domain-containing protein in complex with AMP (SSO3205) from sulfolobus solfataricus at 1.80 a resolution
Analyse Crystal structure of a cbs domain-containing protein in complex with AMP… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3DDJ
- Type
- protein
- Length
- 279 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cbs domain-containing protein
- UniProt
- Q97U20
- Ligands
- AMP
- Pockets
- 2 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cbs domain-containing protein | protein | 279 | 43% helix, 23% strand | Q97U20 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 275 | 0.64 | 0.81 | 30 | empty |
| 2 | 261 | 0.61 | 0.80 | 34 | AMP, PEG |
Modifications
Observed in the structure: 9 modified (engineered).
Compared structures
- 3DDJ · Crystal structure of a cbs domain-containing protein in complex with amp (sso3205) from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q97U20
- Elsewhere: RCSB PDB 3DDJ · PDBe 3DDJ · UniProt Q97U20
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