Research workbench
Crystal structure of ORF12 from the lactococcus lactis bacteriophage P2
Analyse Crystal structure of ORF12 from the lactococcus lactis bacteriophage P2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3D8L
- Type
- protein
- Length
- 270 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ORF12
- UniProt
- D3WAD0
- Pockets
- 2 · best druggability 0.54
Structure
x-ray diffraction · 2 distinct chains · 70% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | ORF12 | protein | 91 | 68% helix, 0% strand | D3WAD0 |
| C | ORF12 | protein | 88 | 72% helix, 0% strand | D3WAD0 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 211 | 0.54 | 0.78 | 32 | empty |
| 2 | 126 | 0.44 | 0.77 | 23 | empty |
Interfaces
3 interfaces between chains.
- B–C · 689 Ų buried · 11 hydrogen bonds · protein-protein
- A–B · 188 Ų buried · 5 hydrogen bonds · protein-protein
- A–C · 29 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 3D8L · Crystal structure of ORF12 from the lactococcus lactis bacteriophage p2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D3WAD0
- Elsewhere: RCSB PDB 3D8L · PDBe 3D8L · UniProt D3WAD0
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