Research workbench
Crystal structure of a pheromone binding protein mutant D35N, from apis mellifera, at pH 5.5
Analyse Crystal structure of a pheromone binding protein mutant D35N, from apis… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3D75
- Type
- protein
- Length
- 117 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pheromone-binding protein ASP1
- UniProt
- Q9U9J6
- Ligands
- NBB
- Pockets
- 1 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 63% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pheromone-binding protein ASP1 | protein | 117 | 63% helix, 2% strand | Q9U9J6 |
Ligands and binding sites
- NBB · N-butyl-benzenesulfonamide · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 236 | 0.78 | 0.90 | 24 | NBB |
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 3D75 · Crystal structure of a pheromone binding protein mutant D35N, from Apis mellifera, at pH… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9U9J6
- Elsewhere: RCSB PDB 3D75 · PDBe 3D75 · UniProt Q9U9J6
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.