Research workbench
Crystal structure of a beta-galactosidase from bacteroides thetaiotaomicron
Analyse Crystal structure of a beta-galactosidase from bacteroides thetaiotaomicron in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3D3A
- Type
- protein
- Length
- 604 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-galactosidase
- UniProt
- Q8AB22
- Pockets
- 6 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 24% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-galactosidase | protein | 604 | 24% helix, 31% strand | Q8AB22 |
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 367 | 0.61 | 0.77 | 41 | empty |
| 2 | 171 | 0.50 | 0.77 | 26 | empty |
| 3 | 112 | 0.39 | 0.75 | 19 | empty |
| 4 | 107 | 0.38 | 0.75 | 19 | empty |
| 5 | 93 | 0.37 | 0.75 | 26 | empty |
Modifications
Observed in the structure: 21 modified (engineered).
Compared structures
- 3D3A · Crystal structure of a beta-galactosidase from Bacteroides thetaiotaomicron · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8AB22
- Elsewhere: RCSB PDB 3D3A · PDBe 3D3A · UniProt Q8AB22
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