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Structure of the ptp-like phytase expressed by selenomonas ruminantium at an ionic strength of 500 mm

Analyse Structure of the ptp-like phytase expressed by selenomonas ruminantium at an… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3D1H
Type: protein
Length: 626 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Myo-inositol hexaphosphate phosphohydrolase
UniProt: Q7WUJ1
Pockets: 6 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Myo-inositol hexaphosphate phosphohydrolase	protein	313	39% helix, 17% strand	Q7WUJ1

Ligands and binding sites

GOL · Glycerol · additive · 5 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	388	0.61	0.77	34	empty
2	344	0.59	0.76	49	GOL
3	312	0.58	0.77	54	empty
4	130	0.50	0.80	23	empty
5	153	0.50	0.78	30	empty

Interfaces

1 interface between chains.

A–B · 660 Å² buried · 3 hydrogen bonds · protein-protein

Compared structures

3D1H · Structure of the PTP-Like Phytase Expressed by Selenomonas Ruminantium at an Ionic… · the same entry in another collection · chain A against A, TM-score 1.00

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Every structure of UniProt Q7WUJ1
Elsewhere: RCSB PDB 3D1H · PDBe 3D1H · UniProt Q7WUJ1

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