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Crystal structure of outer surface protein C (ospc)

Analyse Crystal structure of outer surface protein C (ospc) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1F1M
Type: protein
Length: 648 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Outer surface protein C
UniProt: Q9AGB1
Ligands: ZN
Pockets: 3 · best druggability 0.42

Structure

x-ray diffraction · 1 distinct chain · 67% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	Outer surface protein C	protein	162	67% helix, 2% strand	Q9AGB1

Ligands and binding sites

ZN · Zinc ion · metal · 6 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	122	0.42	0.76	21	empty
2	96	0.41	0.77	22	empty
3	106	0.39	0.75	17	empty

Interfaces

2 interfaces between chains.

A–B · 2310 Å² buried · 14 hydrogen bonds · protein-protein
C–D · 2267 Å² buried · 14 hydrogen bonds · protein-protein

Compared structures

1F1M · Crystal structure of outer surface protein C (ospc) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9AGB1
Elsewhere: RCSB PDB 1F1M · PDBe 1F1M · UniProt Q9AGB1

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