Research workbench
Crystal structure of the unbound lysine riboswitch
Analyse Crystal structure of the unbound lysine riboswitch in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3D0X
- Type
- RNA
- Length
- 161 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (161-mer)
- Pockets
- 6 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA (161-mer) | rna | 161 | — | — |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 899 | 0.70 | 0.77 | 42 | empty |
| 2 | 1177 | 0.68 | 0.74 | 57 | empty |
| 3 | 229 | 0.45 | 0.74 | 16 | empty |
| 4 | 145 | 0.43 | 0.76 | 16 | empty |
| 5 | 62 | 0.35 | 0.79 | 13 | empty |
Compared structures
- 3D0X · Crystal Structure of the unbound lysine riboswitch · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3D0X · PDBe 3D0X
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