Research workbench
Crystal structure of yflh protein from bacillus subtilis. northeast structural genomics consortium target SR326
Analyse Crystal structure of yflh protein from bacillus subtilis. northeast structural… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3D0W
- Type
- protein
- Length
- 341 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Yflh protein
- UniProt
- O34306
- Pockets
- 4 · best druggability 0.63
Structure
x-ray diffraction · 3 distinct chains · 75% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Yflh protein | protein | 86 | 73% helix, 0% strand | O34306 |
| C | Yflh protein | protein | 84 | 77% helix, 0% strand | O34306 |
| D | Yflh protein | protein | 85 | 75% helix, 0% strand | O34306 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 234 | 0.63 | 0.82 | 29 | empty |
| 2 | 288 | 0.57 | 0.77 | 29 | empty |
| 3 | 125 | 0.42 | 0.76 | 14 | empty |
| 4 | 52 | 0.30 | 0.76 | 15 | empty |
Interfaces
6 interfaces between chains.
- B–D · 1412 Ų buried · 8 hydrogen bonds · protein-protein
- A–C · 1371 Ų buried · 9 hydrogen bonds · protein-protein
- A–B · 362 Ų buried · 7 hydrogen bonds · protein-protein
- B–C · 190 Ų buried · 1 hydrogen bond · protein-protein
- A–D · 17 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 3D0W · Crystal structure of YflH protein from Bacillus subtilis. Northeast Structural Genomics… · the same entry in another collection · chain C against C, TM-score 1.00
- O34306 · AlphaFold monomer V2.0 prediction for uncharacterized protein yflh (O34306) · a predicted model of the same protein · chain C against A, TM-score 0.78
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O34306
- Elsewhere: RCSB PDB 3D0W · PDBe 3D0W · UniProt O34306
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.