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Cytochrome C3 from desulfovibrio desulfuricans atcc 27774P

Analyse Cytochrome C3 from desulfovibrio desulfuricans atcc 27774P in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3CYR
Type: protein
Length: 107 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome C3
UniProt: Q9L915
Ligands: HEM
Pockets: 1 · best druggability 0.77

Structure

x-ray diffraction · 1 distinct chain · 30% helix, 11% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome C3	protein	107	30% helix, 11% strand	Q9L915

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	900	0.77	0.80	72	HEM

Modifications

Observed in the structure: 8 cofactor (heme attachment).

Compared structures

3CYR · Cytochrome C3 from desulfovibrio desulfuricans atcc 27774P · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9L915
Elsewhere: RCSB PDB 3CYR · PDBe 3CYR · UniProt Q9L915

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