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Cucumber mosaic virus (strain fny)

Analyse Cucumber mosaic virus (strain fny) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1F15
Type: protein
Length: 538 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Coat protein
UniProt: P69466
Pockets: 4 · best druggability 0.70

Structure

x-ray diffraction · 3 distinct chains · 16% helix, 32% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Coat protein	protein	157	11% helix, 33% strand	P69466
B	Coat protein	protein	190	19% helix, 32% strand	P69466
C	Coat protein	protein	191	17% helix, 31% strand	P69466

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1104	0.70	0.75	93	empty
2	221	0.51	0.76	27	empty
3	74	0.46	0.83	14	empty
4	52	0.27	0.74	16	empty

Interfaces

3 interfaces between chains.

B–C · 1257 Å² buried · 16 hydrogen bonds · protein-protein
A–B · 921 Å² buried · 12 hydrogen bonds · protein-protein
A–C · 269 Å² buried · 4 hydrogen bonds · protein-protein

Compared structures

1F15 · Cucumber mosaic virus (strain fny) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P69466
Elsewhere: RCSB PDB 1F15 · PDBe 1F15 · UniProt P69466

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