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Crystal structure of B-subunit of the DNA gyrase from myxococcus xanthus

Analyse Crystal structure of B-subunit of the DNA gyrase from myxococcus xanthus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3CWV
Type: protein
Length: 660 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA gyrase, B subunit, truncated
UniProt: Q1CZR7
Pockets: 5 · best druggability 0.62

Structure

x-ray diffraction · 2 distinct chains · 35% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DNA gyrase, B subunit, truncated	protein	349	35% helix, 27% strand	Q1CZR7
B	DNA gyrase, B subunit, truncated	protein	311	36% helix, 27% strand	Q1CZR7

Pockets

5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	408	0.62	0.77	38	empty
2	217	0.49	0.75	30	empty
3	183	0.45	0.75	29	empty
4	106	0.41	0.77	24	empty
5	152	0.39	0.73	26	empty

Interfaces

1 interface between chains.

A–B · 679 Å² buried · 13 hydrogen bonds · protein-protein

Compared structures

3CWV · Crystal structure of B-subunit of the DNA gyrase from Myxococcus xanthus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q1CZR7
Elsewhere: RCSB PDB 3CWV · PDBe 3CWV · UniProt Q1CZR7

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