Research workbench
Crystal structure of rcda from caulobacter crescentus CB15
Analyse Crystal structure of rcda from caulobacter crescentus CB15 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3CTW
- Type
- protein
- Length
- 239 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rcda
- UniProt
- Q9A3A9
- Pockets
- 3 · best druggability 0.55
Structure
x-ray diffraction · 2 distinct chains · 69% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Rcda | protein | 120 | 69% helix, 0% strand | Q9A3A9 |
| D | Rcda | protein | 119 | 69% helix, 0% strand | Q9A3A9 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 8 copies · chains B, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 105 | 0.55 | 0.84 | 24 | EDO |
| 2 | 95 | 0.46 | 0.80 | 20 | empty |
| 3 | 106 | 0.42 | 0.77 | 21 | empty |
Interfaces
1 interface between chains.
- B–D · 948 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 3CTW · Crystal Structure of RcdA from Caulobacter crescentus CB15 · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9A3A9
- Elsewhere: RCSB PDB 3CTW · PDBe 3CTW · UniProt Q9A3A9
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