Research workbench
Crystal structure of the complex of the abl tyrosine kinase SH3 domain with 3BP-1 synthetic peptide
Analyse Crystal structure of the complex of the abl tyrosine kinase SH3 domain with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1ABO
- Type
- protein
- Length
- 136 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Abl tyrosine kinase; 3BP-1 synthetic peptide, 10 residues
- EC
- 2.7.1.112
- UniProt
- P00520, P55194
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.36
Structure
x-ray diffraction · 2 distinct chains · 4% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Abl tyrosine kinase (EC 2.7.1.112) | protein | 58 | 5% helix, 50% strand | P00520 |
| C, D | 3BP-1 synthetic peptide, 10 residues | protein | 10 | 0% helix, 0% strand | P55194 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A, C, B, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 101 | 0.36 | 0.74 | 21 | empty |
Interfaces
3 interfaces between chains.
- A–C · 514 Ų buried · 3 hydrogen bonds · protein-protein
- B–D · 503 Ų buried · 2 hydrogen bonds · protein-protein
- A–B · 240 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 1ABO · Crystal structure of the complex of the abl tyrosine kinase SH3 domain with 3BP-1… · the same entry in another collection · chain A against A, TM-score 1.00
- P00520 · AlphaFold monomer V2.0 prediction for tyrosine-protein kinase ABL1 (P00520) · a predicted model of the same protein · chain A against A, TM-score 0.94
- P55194 · AlphaFold monomer V2.0 prediction for SH3 domain-binding protein 1 (P55194) · a predicted model of the same protein · chain C against A, TM-score 0.50
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00520
- Every structure of UniProt P55194
- Elsewhere: RCSB PDB 1ABO · PDBe 1ABO · UniProt P00520 · UniProt P55194
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.