Research workbench
Crystal structure of monobody YSX1/MALTOSE binding protein fusion complex
Analyse Crystal structure of monobody YSX1/MALTOSE binding protein fusion complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3CSB
- Type
- protein
- Length
- 464 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Maltose-binding protein monobody YSX1 fusion
- UniProt
- P0AEX9
- Ligands
- MN
- Pockets
- 3 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Maltose-binding protein monobody YSX1 fusion | protein | 464 | 36% helix, 27% strand | P0AEX9 |
Ligands and binding sites
- MN · Manganese (II) ion · metal · 4 copies · chains A
- PEG · Di(hydroxyethyl)ether · additive · 9 copies · chains A
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
- PGE · Triethylene glycol · additive · chains A
- PG4 · Tetraethylene glycol · additive · chains A
- 1PE · Pentaethylene glycol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 414 | 0.63 | 0.77 | 49 | PEG |
| 2 | 350 | 0.57 | 0.75 | 43 | PGE, 1PE, PEG |
| 3 | 110 | 0.40 | 0.75 | 15 | empty |
Compared structures
- 3CSB · Crystal Structure of Monobody YSX1/Maltose Binding Protein Fusion Complex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AEX9
- Elsewhere: RCSB PDB 3CSB · PDBe 3CSB · UniProt P0AEX9
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