Research workbench
Structure of tRNA dimethylallyltransferase: RNA modification through a channel
Analyse Structure of tRNA dimethylallyltransferase: RNA modification through a channel in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3CRM
- Type
- protein
- Length
- 236 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- TRNA DELTA(2)-isopentenylpyrophosphate transferase
- EC
- 2.5.1.8
- UniProt
- Q9HUL9
- Pockets
- 1 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | TRNA DELTA(2)-isopentenylpyrophosphate transferase (EC 2.5.1.8) | protein | 236 | 48% helix, 14% strand | Q9HUL9 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 453 | 0.70 | 0.80 | 59 | empty |
Compared structures
- 3CRM · Structure of tRNA Dimethylallyltransferase: RNA Modification through a Channel · the same entry in another collection · chain A against A, TM-score 1.00
- Q9HUL9 · AlphaFold monomer V2.0 prediction for tRNA dimethylallyltransferase (Q9HUL9) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HUL9
- Elsewhere: RCSB PDB 3CRM · PDBe 3CRM · UniProt Q9HUL9
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