Research workbench
Structure of the dtdp-4-keto-L-rhamnose reductase related protein (other form) from thermus thermophilus HB8
Analyse Structure of the dtdp-4-keto-L-rhamnose reductase related protein (other form)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3CQ2
- Type
- protein
- Length
- 386 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative uncharacterized protein TTHB138
- UniProt
- Q53W28
- Pockets
- 5 · best druggability 0.75
Structure
x-ray diffraction · 2 distinct chains · 30% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, D | Putative uncharacterized protein TTHB138 | protein | 96 | 30% helix, 24% strand | Q53W28 |
| B | Putative uncharacterized protein TTHB138 | protein | 98 | 31% helix, 23% strand | Q53W28 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1006 | 0.75 | 0.78 | 101 | empty |
| 2 | 97 | 0.36 | 0.74 | 24 | empty |
| 3 | 81 | 0.34 | 0.75 | 22 | empty |
| 4 | 51 | 0.33 | 0.78 | 15 | empty |
| 5 | 74 | 0.32 | 0.74 | 13 | empty |
Interfaces
4 interfaces between chains.
- A–D · 597 Ų buried · 8 hydrogen bonds · protein-protein
- A–B · 592 Ų buried · 8 hydrogen bonds · protein-protein
- C–D · 572 Ų buried · 7 hydrogen bonds · protein-protein
- B–C · 570 Ų buried · 8 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 3CQ2 · Structure of the DTDP-4-Keto-L-Rhamnose Reductase related protein (other form) from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q53W28
- Elsewhere: RCSB PDB 3CQ2 · PDBe 3CQ2 · UniProt Q53W28
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