Research workbench
Crystal structure of gida from E. COLI
Analyse Crystal structure of gida from E. COLI in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3CP2
- Type
- protein
- Length
- 491 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- TRNA uridine 5-carboxymethylaminomethyl modification enzyme gida
- EC
- 1.-.-.-
- UniProt
- P0A6U3
- Ligands
- SO4
- Pockets
- 6 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | TRNA uridine 5-carboxymethylaminomethyl modification enzyme gida (EC 1.-.-.-) | protein | 491 | 35% helix, 18% strand | P0A6U3 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 492 | 0.66 | 0.78 | 60 | SO4 |
| 2 | 276 | 0.59 | 0.78 | 32 | empty |
| 3 | 103 | 0.39 | 0.76 | 19 | empty |
| 4 | 51 | 0.33 | 0.78 | 18 | empty |
| 5 | 60 | 0.33 | 0.77 | 15 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A6U3
- Elsewhere: RCSB PDB 3CP2 · PDBe 3CP2 · UniProt P0A6U3
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.