Research workbench
X-ray crystal structure of a monofunctional platinum-DNA adduct, cis- {PT(NH3)2(PYRIDINE)}2+ bound to deoxyguanosine in a dodecamer duplex
Analyse X-ray crystal structure of a monofunctional platinum-DNA adduct, cis… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3CO3
- Type
- DNA
- Length
- 24 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*DCP*DCP*DTP*DCP*DTP*DCP*DGP*DTP*DCP*DTP*DCP*DC)-3'…
- Ligands
- C7P
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-D(*DCP*DCP*DTP*DCP*DTP*DCP*DGP*DTP*DCP*DTP*DCP*DC)-3' | dna | 12 | — | — |
| B | 5'-D(*DGP*DGP*DAP*DGP*DAP*DCP*DGP*DAP*DGP*DAP*DGP*DG)-3' | dna | 12 | — | — |
Ligands and binding sites
- C7P · cis-diammine(pyridine)chloroplatinum(II) · ligand · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 530 Ų buried · 49 hydrogen bonds · nucleic-nucleic
Compared structures
- 3CO3 · X-Ray Crystal Structure of a Monofunctional Platinum-DNA Adduct… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3CO3 · PDBe 3CO3
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