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Crystal structure of adenylate kinase from thermus thermophilus HB8

Analyse Crystal structure of adenylate kinase from thermus thermophilus HB8 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3CM0
Type: protein
Length: 184 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Adenylate kinase
EC: 2.7.4.3
UniProt: Q5SHQ9
Pockets: 2 · best druggability 0.41

Structure

x-ray diffraction · 1 distinct chain · 59% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Adenylate kinase (EC 2.7.4.3)	protein	184	59% helix, 16% strand	Q5SHQ9

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	119	0.41	0.75	17	empty
2	83	0.35	0.75	16	empty

Compared structures

3CM0 · Crystal structure of adenylate kinase from Thermus thermophilus HB8 · the same entry in another collection · chain A against A, TM-score 1.00
Q5SHQ9 · AlphaFold monomer V2.0 prediction for adenylate kinase (Q5SHQ9) · a predicted model of the same protein · chain A against A, TM-score 0.74

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5SHQ9
Elsewhere: RCSB PDB 3CM0 · PDBe 3CM0 · UniProt Q5SHQ9

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