Research workbench
Minimal recognition complex between prma and ribosomal protein L11
Analyse Minimal recognition complex between prma and ribosomal protein L11 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3CJS
- Type
- protein
- Length
- 198 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribosomal protein L11 methyltransferase; 50S ribosomal protein L11
- EC
- 2.1.1.-
- UniProt
- Q84BQ9, P36238
Structure
x-ray diffraction · 3 distinct chains · 24% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosomal protein L11 methyltransferase (EC 2.1.1.-) | protein | 58 | 16% helix, 36% strand | Q84BQ9 |
| B | 50S ribosomal protein L11 | protein | 72 | 29% helix, 33% strand | P36238 |
| C | 50S ribosomal protein L11 | protein | 68 | 26% helix, 35% strand | P36238 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 3 copies · chains B, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
2 interfaces between chains.
- A–B · 696 Ų buried · 3 hydrogen bonds · protein-protein
- A–C · 410 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 3CJS · Minimal Recognition Complex between PrmA and Ribosomal Protein L11 · the same entry in another collection · chain A against A, TM-score 1.00
- P36238 · AlphaFold monomer V2.0 prediction for 50S ribosomal protein L11 (P36238) · a predicted model of the same protein · chain C against A, TM-score 0.98
- Q84BQ9 · AlphaFold monomer V2.0 prediction for ribosomal protein L11 methyltransferase (Q84BQ9) · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q84BQ9
- Every structure of UniProt P36238
- Elsewhere: RCSB PDB 3CJS · PDBe 3CJS · UniProt Q84BQ9 · UniProt P36238
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