Research workbench
Crystal structure of a protein of unknown function (ECA1910) from pectobacterium atrosepticum SCRI1043 at 2.20 a resolution
Analyse Crystal structure of a protein of unknown function (ECA1910) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3CJL
- Type
- protein
- Length
- 175 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Domain of unknown function
- UniProt
- Q6D5X8
- Pockets
- 3 · best druggability 0.45
Structure
x-ray diffraction · 2 distinct chains · 51% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Domain of unknown function | protein | 88 | 50% helix, 19% strand | Q6D5X8 |
| B | Domain of unknown function | protein | 87 | 52% helix, 20% strand | Q6D5X8 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 100 | 0.45 | 0.79 | 18 | empty |
| 2 | 96 | 0.42 | 0.78 | 17 | empty |
| 3 | 60 | 0.36 | 0.78 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 2159 Ų buried · 23 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 16 modified (engineered).
Compared structures
- 3CJL · Crystal structure of a protein of unknown function (eca1910) from pectobacterium… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6D5X8
- Elsewhere: RCSB PDB 3CJL · PDBe 3CJL · UniProt Q6D5X8
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