Research workbench
Crystal structure of the yjha protein from bacillus subtilis. northeast structural genomics consortium target SR562
Analyse Crystal structure of the yjha protein from bacillus subtilis. northeast… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3CFU
- Type
- protein
- Length
- 280 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized lipoprotein yjha
- UniProt
- O34725
- Pockets
- 3 · best druggability 0.65
Structure
x-ray diffraction · 2 distinct chains · 12% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized lipoprotein yjha | protein | 145 | 11% helix, 45% strand | O34725 |
| B | Uncharacterized lipoprotein yjha | protein | 135 | 13% helix, 44% strand | O34725 |
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 84 | 0.65 | 0.91 | 18 | empty |
| 2 | 233 | 0.52 | 0.76 | 35 | empty |
| 3 | 206 | 0.52 | 0.77 | 37 | empty |
Interfaces
1 interface between chains.
- A–B · 820 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 3CFU · Crystal structure of the yjhA protein from Bacillus subtilis. Northeast Structural… · the same entry in another collection · chain A against A, TM-score 1.00
- O34725 · AlphaFold monomer V2.0 prediction for uncharacterized lipoprotein yjha (O34725) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O34725
- Elsewhere: RCSB PDB 3CFU · PDBe 3CFU · UniProt O34725
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.