Research workbench
Crystal structure of the ubc domain of baculoviral iap repeat- containing protein 6
Analyse Crystal structure of the ubc domain of baculoviral iap repeat- containing… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3CEG
- Type
- protein
- Length
- 584 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Baculoviral iap repeat-containing protein 6
- EC
- 6.3.2.19
- UniProt
- Q9NR09
- Pockets
- 5 · best druggability 0.79
Structure
x-ray diffraction · 2 distinct chains · 45% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Baculoviral iap repeat-containing protein 6 (EC 6.3.2.19) | protein | 292 | 46% helix, 14% strand | Q9NR09 |
| B | Baculoviral iap repeat-containing protein 6 (EC 6.3.2.19) | protein | 292 | 45% helix, 14% strand | Q9NR09 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 797 | 0.79 | 0.83 | 73 | empty |
| 2 | 174 | 0.59 | 0.82 | 32 | empty |
| 3 | 230 | 0.48 | 0.74 | 32 | empty |
| 4 | 101 | 0.37 | 0.75 | 19 | empty |
| 5 | 51 | 0.25 | 0.73 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 838 Ų buried · 8 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 14 modified (engineered).
Compared structures
- 3CEG · Crystal structure of the UBC domain of baculoviral IAP repeat-containing protein 6 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NR09
- Elsewhere: RCSB PDB 3CEG · PDBe 3CEG · UniProt Q9NR09
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.