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Crystal structure of a putative 4-amino-4-deoxychorismate lyase (HS_0128) from haemophilus somnus 129PT at 2.40 a resolution

Analyse Crystal structure of a putative 4-amino-4-deoxychorismate lyase (HS_0128) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3CEB
Type: protein
Length: 194 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: D-aminoacid aminotransferase-like plp-dependent enzyme
UniProt: Q0I0Z6
Ligands: SO4
Pockets: 3 · best druggability 0.45

Structure

x-ray diffraction · 1 distinct chain · 25% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	D-aminoacid aminotransferase-like plp-dependent enzyme	protein	194	25% helix, 31% strand	Q0I0Z6

Ligands and binding sites

SO4 · Sulfate ion · ion · 5 copies · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	134	0.45	0.77	14	empty
2	93	0.35	0.74	26	GOL
3	64	0.34	0.77	16	empty

Modifications

Observed in the structure: 5 modified (engineered, cofactor).

Compared structures

3CEB · Crystal structure of a putative 4-amino-4-deoxychorismate lyase (hs_0128) from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q0I0Z6
Elsewhere: RCSB PDB 3CEB · PDBe 3CEB · UniProt Q0I0Z6

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