Research workbench
Crystal structure of E. COLI pnpase
Analyse Crystal structure of E. COLI pnpase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3CDI
- Type
- protein
- Length
- 516 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Polynucleotide phosphorylase
- EC
- 2.7.7.8
- Pockets
- 5 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polynucleotide phosphorylase (EC 2.7.7.8) | protein | 516 | 35% helix, 27% strand | — |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 734 | 0.70 | 0.77 | 78 | empty |
| 2 | 54 | 0.35 | 0.79 | 16 | empty |
| 3 | 55 | 0.33 | 0.77 | 13 | empty |
| 4 | 59 | 0.32 | 0.76 | 17 | empty |
| 5 | 62 | 0.27 | 0.73 | 17 | empty |
Compared structures
- 3CDI · Crystal structure of E. coli PNPase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3CDI · PDBe 3CDI
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.