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Crystal structure of the S. pombe peptidase homology domain of fact complex subunit SPT16 (form B)

Analyse Crystal structure of the S. pombe peptidase homology domain of fact complex… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3CB6
Type: protein
Length: 441 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Fact complex subunit SPT16
UniProt: O94267
Pockets: 7 · best druggability 0.58

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Fact complex subunit SPT16	protein	441	41% helix, 21% strand	O94267

Pockets

7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	303	0.58	0.78	39	empty
2	180	0.56	0.80	45	empty
3	123	0.49	0.79	18	empty
4	96	0.40	0.77	17	empty
5	95	0.37	0.75	19	empty

Compared structures

3CB6 · Crystal Structure of the S. pombe Peptidase Homology Domain of FACT complex subunit Spt16… · the same entry in another collection · chain A against A, TM-score 1.00
O94267 · AlphaFold monomer V2.0 prediction for fact complex subunit SPT16 (O94267) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O94267
Elsewhere: RCSB PDB 3CB6 · PDBe 3CB6 · UniProt O94267

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