Research workbench
Crystal structure of a putative membrane protein from corynebacterium diphtheriae
Analyse Crystal structure of a putative membrane protein from corynebacterium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3C8I
- Type
- protein
- Length
- 256 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative membrane protein
- UniProt
- Q6NIK4
- Pockets
- 4 · best druggability 0.45
Structure
x-ray diffraction · 2 distinct chains · 25% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative membrane protein | protein | 127 | 24% helix, 38% strand | Q6NIK4 |
| B | Putative membrane protein | protein | 129 | 26% helix, 38% strand | Q6NIK4 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 157 | 0.45 | 0.76 | 20 | empty |
| 2 | 111 | 0.40 | 0.75 | 18 | empty |
| 3 | 91 | 0.37 | 0.76 | 27 | empty |
| 4 | 70 | 0.33 | 0.75 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 526 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 3C8I · Crystal structure of a putative membrane protein from Corynebacterium diphtheriae · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6NIK4
- Elsewhere: RCSB PDB 3C8I · PDBe 3C8I · UniProt Q6NIK4
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.