Research workbench
Structure of the retaining glycosyltransferase msha: the first step in mycothiol biosynthesis. organism: corynebacterium glutamicum- apo (open) structure.
Analyse Structure of the retaining glycosyltransferase msha: the first step in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3C48
- Type
- protein
- Length
- 795 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Predicted glycosyltransferases
- EC
- 2.4.1.-
- UniProt
- Q8NTA6
- Ligands
- SO4
- Pockets
- 10 · best druggability 0.62
Structure
x-ray diffraction · 2 distinct chains · 47% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Predicted glycosyltransferases (EC 2.4.1.-) | protein | 399 | 48% helix, 18% strand | Q8NTA6 |
| B | Predicted glycosyltransferases (EC 2.4.1.-) | protein | 396 | 47% helix, 18% strand | Q8NTA6 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 8 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
10 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 176 | 0.62 | 0.84 | 29 | empty |
| 2 | 344 | 0.56 | 0.75 | 36 | empty |
| 3 | 333 | 0.56 | 0.75 | 37 | empty |
| 4 | 55 | 0.56 | 0.89 | 17 | empty |
| 5 | 133 | 0.42 | 0.76 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 1497 Ų buried · 20 hydrogen bonds · protein-protein
Compared structures
- 3C48 · Structure of the retaining glycosyltransferase MshA: The first step in mycothiol… · the same entry in another collection · chain A against A, TM-score 1.00
- Q8NTA6 · AlphaFold monomer V2.0 prediction for D-inositol 3-phosphate glycosyltransferase (Q8NTA6) · a predicted model of the same protein · chain B against A, TM-score 0.60
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8NTA6
- Elsewhere: RCSB PDB 3C48 · PDBe 3C48 · UniProt Q8NTA6
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