Research workbench
Crystal structure of the vibrio cholerae luxq periplasmic domain (semet)
Analyse Crystal structure of the vibrio cholerae luxq periplasmic domain (semet) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3C30
- Type
- protein
- Length
- 219 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Autoinducer 2 sensor KINASE/PHOSPHATASE luxq
- EC
- 2.7.13.3, 3.1.3.-
- UniProt
- Q9KLK7
- Pockets
- 1 · best druggability 0.25
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Autoinducer 2 sensor KINASE/PHOSPHATASE luxq (EC 2.7.13.3, 3.1.3.-) | protein | 219 | 36% helix, 31% strand | Q9KLK7 |
Ligands and binding sites
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 51 | 0.25 | 0.73 | 15 | empty |
Modifications
Observed in the structure: 1 modified (engineered).
Compared structures
- 3C30 · Crystal structure of the Vibrio Cholerae LuxQ periplasmic domain (SeMet) · the same entry in another collection · chain A against A, TM-score 1.00
- Q9KLK7 · AlphaFold monomer V2.0 prediction for autoinducer 2 sensor KINASE/PHOSPHATASE luxq… · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KLK7
- Elsewhere: RCSB PDB 3C30 · PDBe 3C30 · UniProt Q9KLK7
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