Research workbench
Crystal structure of open form of menaquinone-specific isochorismate synthase, menf
Analyse Crystal structure of open form of menaquinone-specific isochorismate synthase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3BZN
- Type
- protein
- Length
- 430 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Menaquinone-specific isochorismate synthase
- EC
- 5.4.4.2
- UniProt
- P38051
- Ligands
- MG, SO4
- Pockets
- 3 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Menaquinone-specific isochorismate synthase (EC 5.4.4.2) | protein | 430 | 32% helix, 36% strand | P38051 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 51 | 0.70 | 0.98 | 21 | SO4 |
| 2 | 84 | 0.39 | 0.78 | 25 | empty |
| 3 | 78 | 0.38 | 0.77 | 13 | empty |
Compared structures
- 3BZN · Crystal Structure of Open form of Menaqui -Specific Isochorismate Synthase, MenF · the same entry in another collection · chain A against A, TM-score 1.00
- P38051 · AlphaFold monomer V2.0 prediction for isochorismate synthase menf (P38051) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P38051
- Elsewhere: RCSB PDB 3BZN · PDBe 3BZN · UniProt P38051
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