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Crystal structure of the longin domain of yeast YKT6

Analyse Crystal structure of the longin domain of yeast YKT6 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3BW6
Type: protein
Length: 137 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Synaptobrevin homolog YKT6
EC: 2.3.1.-
UniProt: P36015
Ligands: SO4

Structure

x-ray diffraction · 1 distinct chain · 35% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Synaptobrevin homolog YKT6 (EC 2.3.1.-)	protein	137	35% helix, 27% strand	P36015

Ligands and binding sites

SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

3BW6 · Crystal structure of the longin domain of yeast Ykt6 · the same entry in another collection · chain A against A, TM-score 1.00
P36015 · AlphaFold monomer V2.0 prediction for synaptobrevin homolog YKT6 (P36015) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P36015
Elsewhere: RCSB PDB 3BW6 · PDBe 3BW6 · UniProt P36015

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