Research workbench

Light harvesting protein from rc of chlorobium tepidum

Analyse Light harvesting protein from rc of chlorobium tepidum in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3BSD
Type: protein
Length: 359 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Bacteriochlorophyll a protein
UniProt: Q46393
Ligands: BCL, MG
Pockets: 2 · best druggability 0.78

Structure

x-ray diffraction · 1 distinct chain · 17% helix, 48% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Bacteriochlorophyll a protein	protein	359	17% helix, 48% strand	Q46393

Ligands and binding sites

BCL · Bacteriochlorophyll A · ligand · 8 copies · chains A
MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	737	0.78	0.82	74	BCL
2	607	0.74	0.80	68	BCL

Compared structures

3BSD · Light harvesting protein from RC of Chlorobium tepidum · the same entry in another collection · chain A against A, TM-score 1.00
Q46393 · AlphaFold monomer V2.0 prediction for bacteriochlorophyll a protein (Q46393) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q46393
Elsewhere: RCSB PDB 3BSD · PDBe 3BSD · UniProt Q46393

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