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Crystal structure of sugar transporter from clostridium phytofermentans

Analyse Crystal structure of sugar transporter from clostridium phytofermentans in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3BRS
Type: protein
Length: 542 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Periplasmic binding PROTEIN/LACI transcriptional regulator
UniProt: Q1FMG2
Pockets: 6 · best druggability 0.71

Structure

x-ray diffraction · 2 distinct chains · 43% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Periplasmic binding PROTEIN/LACI transcriptional regulator	protein	271	43% helix, 21% strand	Q1FMG2
B	Periplasmic binding PROTEIN/LACI transcriptional regulator	protein	271	42% helix, 22% strand	Q1FMG2

Pockets

6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	484	0.71	0.80	61	empty
2	120	0.46	0.78	22	empty
3	132	0.44	0.76	25	empty
4	115	0.42	0.76	23	empty
5	109	0.38	0.75	26	empty

Interfaces

1 interface between chains.

A–B · 433 Å² buried · 4 hydrogen bonds · protein-protein

Compared structures

3BRS · Crystal structure of sugar transporter from Clostridium phytofermentans · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q1FMG2
Elsewhere: RCSB PDB 3BRS · PDBe 3BRS · UniProt Q1FMG2

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