Research workbench
Crystal structure of ADP-glucose pyrophosphorylase from agrobacterium tumefaciens
Analyse Crystal structure of ADP-glucose pyrophosphorylase from agrobacterium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3BRK
- Type
- protein
- Length
- 395 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glucose-1-phosphate adenylyltransferase
- EC
- 2.7.7.27
- UniProt
- P39669
- Ligands
- SO4
- Pockets
- 3 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) | protein | 395 | 26% helix, 30% strand | P39669 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 3 copies · chains X
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 405 | 0.61 | 0.76 | 56 | empty |
| 2 | 319 | 0.57 | 0.76 | 41 | SO4 |
| 3 | 67 | 0.30 | 0.73 | 14 | empty |
Modifications
Observed in the structure: 9 modified (engineered).
Compared structures
- 3BRK · Crystal Structure of ADP-Glucose Pyrophosphorylase from Agrobacterium tumefaciens · the same entry in another collection · chain X against X, TM-score 1.00
- P39669 · AlphaFold monomer V2.0 prediction for glucose-1-phosphate adenylyltransferase (P39669) · a predicted model of the same protein · chain X against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P39669
- Elsewhere: RCSB PDB 3BRK · PDBe 3BRK · UniProt P39669
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