Research workbench
Structure of mouse beta-neurexin 2D4
Analyse Structure of mouse beta-neurexin 2D4 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3BOP
- Type
- protein
- Length
- 505 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-neurexin 2D4
- UniProt
- Q3TQ54
- Pockets
- 1 · best druggability 0.81
Structure
x-ray diffraction · 3 distinct chains · 4% helix, 55% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-neurexin 2D4 | protein | 168 | 4% helix, 54% strand | Q3TQ54 |
| B | Beta-neurexin 2D4 | protein | 168 | 4% helix, 60% strand | Q3TQ54 |
| C | Beta-neurexin 2D4 | protein | 169 | 4% helix, 52% strand | Q3TQ54 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1074 | 0.81 | 0.83 | 112 | empty |
Interfaces
3 interfaces between chains.
- A–B · 813 Ų buried · 12 hydrogen bonds · protein-protein
- A–C · 729 Ų buried · 13 hydrogen bonds · protein-protein
- B–C · 179 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 3BOP · Structure of mouse beta-neurexin 2D4 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3TQ54
- Elsewhere: RCSB PDB 3BOP · PDBe 3BOP · UniProt Q3TQ54
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