Research workbench
Carbonic anhydrase from marine diatom thalassiosira weissflogii- cadmium bound domain 1 without bound metal (CDCA1-R1)
Analyse Carbonic anhydrase from marine diatom thalassiosira weissflogii- cadmium bound… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3BOJ
- Type
- protein
- Length
- 209 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cadmium-specific carbonic anhydrase
- EC
- 4.2.1.1
- UniProt
- Q50EL4
- Pockets
- 2 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cadmium-specific carbonic anhydrase (EC 4.2.1.1) | protein | 209 | 36% helix, 19% strand | Q50EL4 |
Ligands and binding sites
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 63 | 0.48 | 0.84 | 16 | empty |
| 2 | 60 | 0.37 | 0.79 | 18 | empty |
Compared structures
- 3BOJ · Carbonic anhydrase from marine diatom Thalassiosira weissflogii- cadmium bound domain 1… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q50EL4
- Elsewhere: RCSB PDB 3BOJ · PDBe 3BOJ · UniProt Q50EL4
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