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Crystal structure of riboflavin kinase from trypanosoma brucei

Analyse Crystal structure of riboflavin kinase from trypanosoma brucei in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3BNW
Type: protein
Length: 317 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Riboflavin kinase, putative
EC: 2.7.1.26
UniProt: Q38DG4
Pockets: 5 · best druggability 0.56

Structure

x-ray diffraction · 2 distinct chains · 24% helix, 38% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Riboflavin kinase, putative (EC 2.7.1.26)	protein	160	23% helix, 38% strand	Q38DG4
B	Riboflavin kinase, putative (EC 2.7.1.26)	protein	157	25% helix, 38% strand	Q38DG4

Pockets

5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	250	0.56	0.77	33	empty
2	164	0.45	0.75	29	empty
3	103	0.42	0.77	19	empty
4	115	0.40	0.75	18	empty
5	90	0.35	0.75	24	empty

Interfaces

1 interface between chains.

A–B · 856 Å² buried · 20 hydrogen bonds · protein-protein

Compared structures

3BNW · Crystal structure of riboflavin kinase from Trypanosoma brucei · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q38DG4
Elsewhere: RCSB PDB 3BNW · PDBe 3BNW · UniProt Q38DG4

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