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Crystal structure of the homo sapiens mitochondrial ribosomal decoding site (A1555G mutant)

Analyse Crystal structure of the homo sapiens mitochondrial ribosomal decoding site… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3BNP
Type: RNA
Length: 43 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: A site of human mitochondrial ribosome, a chain; A site of human mitochondrial ribosome…
Ligands: K
Pockets: 1 · best druggability 0.43

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	A site of human mitochondrial ribosome, a chain	rna	22	—	—
B	A site of human mitochondrial ribosome, B chain	rna	21	—	—

Ligands and binding sites

K · Potassium ion · metal · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	230	0.43	0.73	22	empty

Interfaces

1 interface between chains.

A–B · 909 Å² buried · 101 hydrogen bonds · nucleic-nucleic

Compared structures

3BNP · Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (A1555G… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 3BNP · PDBe 3BNP

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